[Pro] Subfolder for Mal's Ecommerce

Hi there, I am using Freeway 5 Pro and the e-commerce set up and I have an account with Mal’s e-commerce. It all works fine when I upload the site folder to the root directory on my server, however I need this to be in a subfolder and when I do this the browser returns a message saying that the config file cannot be found, go to Mal’s and check URL settings. I understand that the script is looking for the files in the root directory but how can I set it up so that it can see it in a sub directory. The issue is that I need several sub directories to work, does anyone have any answers,



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